Tag Archives: SRP072283

SRA Release – Transcriptomic Profiles of Adult Female & Male Gonads in Panopea generosa (Pacific geoduck)

The RNAseq data that I previously submitted to NCBI short read archive (SRA) has been released to the public today. Here are the various links for the project:

Study: SRP072283http://trace.ncbi.nlm.nih.gov/Traces/study/?acc=SRP072283

 

BioProject: PRJNA316216http://www.ncbi.nlm.nih.gov/bioproject/PRJNA316216

Study: SRP072283http://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP072283

Female Pool Experiment: SRX1659865http://www.ncbi.nlm.nih.gov/sra/SRX1659865

Male Pool Experiment: SRX1659865http://www.ncbi.nlm.nih.gov/sra/SRX1659866

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SRA Submission – Transcriptomic Profiles of Adult Female & Male Gonads in Panopea generosa (Pacific geoduck).

RNAseq experiment, which is part of a larger project that involves characterizing geoduck gonad development across multiple stages: histologically, proteomically, and transcriptomically. Initial sample collection performed by Grace Crandall.

The current status can be seen in the screen cap below. Current release date is set for a year from now, but will likely bump it up. Need Steven to review the details of the submission (BioProject, Experiment descriptions, etc.) before I initiate the public release. Will update this post with the SRA number once we receive it.

Here’s the list of files uploaded to the SRA:

Geo_Pool_F_GGCTAC_L006_R1_001.fastq.gz
Geo_Pool_F_GGCTAC_L006_R2_001.fastq.gz
Geo_Pool_M_CTTGTA_L006_R1_001.fastq.gz
Geo_Pool_M_CTTGTA_L006_R2_001.fastq.gz

Mate pair sequencing files were uploaded together within a single “Run”.

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