Scripting and Summarizing

Today we added the gene ontology information to the seastar transcriptome contigs.

We ran the count data through deseq2 to find significantly differentially expressed genes.

There were a lot!

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Here is today’s notebook:

We then added the uniprot IDs back onto the significantly DEGenes and summarized the resulting information using revigo:

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We also ran them through david to find enriched genes:

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Interestingly, we see a lot of immune-function related genes!  More to come!

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