Today was exploratory…we’re attempting to mine the SS data by exploring the various tools out there that we discussed yesterday. I spent most of the day trying to merge files and examining the individual sample response, rather than the log2 fold change.

Of those significant genes we had 1629 with negative expression (ranging from log2 FC from -6.94 to -0.93), while 2103 had a positive expression (ranging from log2 FC 0.88 to 10.87). We’ll look into what that means per sample and condition in the upcoming days.

 The obvious trends occurring across all of the data at the GO level is below.

Screen Shot 2014-08-07 at 5.20.25 PM

My IPNotebook is below:

Screen Shot 2014-08-07 at 5.03.40 PM

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