Yesterday I uploaded v0.0.1 of the Geoduck genome to CoGe.
Now I want to start adding tracks. To do this I used CLC to create RNA-seq tracks from our male and female gonad transcriptome data.
As would be expected only a small amount of reads mapped. This is as we are limiting the genome to the 22 scaffolds with length > 100k.
One thing to point out (and will have to be followed up on) is that many more Female reads mapped back.
I took the Reads data and exported to BAM.
Then uploaded to CoGe.
I called this Version 1, and interestingly I got some cool options.. so I selected them.
This included saving as a Notebook.
This was Finished in less than 5 minutes!
The SNP view.
Voila – we have it in a Browser.
and you can zoom in
Here we have a Notebook view
It is now public, though not quite sure if there is a url.
Everything is public so please give it a look / twirl.