Getting back on tracks

Posted by & filed under Panopea generosa.

Yesterday I uploaded v0.0.1 of the Geoduck genome to CoGe. Now I want to start adding tracks. To do this I used CLC to create RNA-seq tracks from our male and female gonad transcriptome data. As would be expected only a small amount of reads mapped. This is as we are limiting the genome to… Read more »

Passing Flanks

Posted by & filed under Ostrea lurida.

A first look at population differences at qPCR primer sites for three population of Olympia oysters Plate 1 (samwhite_112381) included, BMP2, CARM, HSPb11, and PGEEP4. At the bottom is a full list of qPCR primers. BMP2 Limited coverage CARM Better coverage conflicts were ambigs (ie S,W,R) HSPb11 Missed qPCR primer (R did not seem to… Read more »