Quality Trimming – LSU C.virginica Oil Spill MBD BS-Seq Data

Jupyter (IPython) Notebook: 20150414_C_virginica_LSU_Oil_Spill_Trimmomatic_FASTQC.ipynb

NBviewer: 20150414_C_virginica_LSU_Oil_Spill_Trimmomatic_FASTQC.ipynb

Trimmed FASTQC

NB3 No oil Index – ACAGTG

20150414_trimmed_2112_lane1_ACAGTG_L001_R1_001_fastqc.html
20150414_trimmed_2112_lane1_ACAGTG_L001_R1_002_fastqc.html

NB6 No oil Index – GCCAAT

20150414_trimmed_2112_lane1_GCCAAT_L001_R1_001_fastqc.html
20150414_trimmed_2112_lane1_GCCAAT_L001_R1_002_fastqc.html

NB11 No oil Index – CAGATC

20150414_trimmed_2112_lane1_CAGATC_L001_R1_001_fastqc.html
20150414_trimmed_2112_lane1_CAGATC_L001_R1_002_fastqc.html
20150414_trimmed_2112_lane1_CAGATC_L001_R1_003_fastqc.html

HB2 25,000ppm oil Index – ATCACG

20150414_trimmed_2112_lane1_ATCACG_L001_R1_001_fastqc.html
20150414_trimmed_2112_lane1_ATCACG_L001_R1_002_fastqc.html
20150414_trimmed_2112_lane1_ATCACG_L001_R1_003_fastqc.html

HB16 25,000ppm oil Index – TTAGGC

20150414_trimmed_2112_lane1_TTAGGC_L001_R1_001_fastqc.html
20150414_trimmed_2112_lane1_TTAGGC_L001_R1_002_fastqc.html

HB30 25,000ppm oil Index – TGACCA

20150414_trimmed_2112_lane1_TGACCA_L001_R1_001_fastqc.html

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