See Jupyter Notebook in Results section for Quast execution.
Heatmapped table of results: http://owl.fish.washington.edu/Athaliana/quast_results/results_2018_01_16_10_08_35/report.html
After all the difficulties with PB Jelly, it has produced the most large contigs. However, it does also have the highest quantity and rate of N’s of all the assemblies produced to date.
# contigs (>= 50000 bp): pbjelly_sjw_01 (894)
Largest Contig: redundans_sjw_02 (322,397bp)
Total Length: pbjelly_sjw_01 (1,180,563,613bp)
Total Length (>=50,000bp): pbjelly_sjw_01 (57,741,906bp)
N50: redundans_sjw_03 (17,679bp)
Jupyter Notebook (GitHub): 20180116_swoose_oly_assembly_comparisons_quast.ipynb