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Morgan Eisenlord wrote a new notebook entry Wnt Signaling KEGG Pathway in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
Below is the the KEGG pathway for the Wnt Signaling Pathway in purple sea urchins (green). I have added all the contegs found significantly enriched in the Pycnopodia transcriptome. They are in the red and blue […]
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Morgan Eisenlord wrote a new notebook entry Where can a naked armadillo and a dishevelled porcupine be found? in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
The Wnt pathway! http://web.stanford.edu/group/nusselab/cgi-bin/wnt/reporters. Play the video to see a baby Zebrafish expressing Tcf/Lef-miniP:dGFP.
My post today will be covering the weekend as well as today, […]
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Morgan Eisenlord wrote a new notebook entry IPython Notebook – Enrichment in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
Here is my IPython notebook from the 8-12-14. I went through all the steps to enrichment. The files are now organized under my folder on maxine.
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Morgan Eisenlord wrote a new notebook entry Pisaster Survivorship update, Summer 2014, San Juan Islands in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
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Morgan Eisenlord wrote a new notebook entry Oysters, clams, and mussels, oh my! in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
Yesterday I got the results back from the qPCR that I sent out at the start of the class. This was a very interesting set of samples. It included clams from several sites with sea star wasting disease and a set of […]
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Morgan Eisenlord wrote a new notebook entry Interesting paper! in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
Paper on using next gen sequencing to find viruses in insects
Sijun_etal_Viruses2011_NextGenerationSequencingInsectVirusDiscovery
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Morgan Eisenlord wrote a new notebook entry in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
This mornings post is an summery of the work I did on Friday and finished up over the weekend. There was a lot of coding and great visualizations! Lauren gave us a WGCNA tutorial. Below is the R […]
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Morgan Eisenlord wrote a new notebook entry How to enter IPython Notebooks to workpress in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
1. Open my notebook in the mirrored maxine
2. Copy the ULR of the notebook into http://nbviewer.ipython.org/
3. Now, copy the nbviewer ULR for the notebook into the quotes in the code below and add to the post.
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Morgan Eisenlord wrote a new notebook entry IPython Notebook 1 in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
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Morgan Eisenlord wrote a new notebook entry Sea Star Immune Response in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
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Morgan Eisenlord wrote a new notebook entry Harvell lab studies sea star wasting disease 2014 in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
This is not really a week in review video, but it goes along with the weeks topic of sea star wasting disease so I thought it could go here. I will post another for last week.
Here is the story of SSWD research […]
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Morgan Eisenlord wrote a new notebook entry ! BLAST in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
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Morgan Eisenlord wrote a new notebook entry YSI Date from Eelgrass bed on Shaw Island, WA, Picnic Cove in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
Data from the YSI taken at Picnic Cove on Shaw Island, WA. Each reading was taken off the bottom by few inches. The site was moderately infected with the laby. There were more blades with lesions at the site then […]
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Morgan Eisenlord wrote a new notebook entry Z. marina Density: False Bay in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
Date
Site
Transect
Meter
Z. marina density (non flowering)
Z. marina density (non flowering)7/24/14
False Bay
Shallow
0
0
07/24/14
False Bay
Shallow
25
18
27/24/14
False […] -
Morgan Eisenlord wrote a new notebook entry putting it all together… in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
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Morgan Eisenlord wrote a new notebook entry Week 1 Video in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
Week 1 video posted!
Got to learn about pathogenic protists yesterday (bitter crab syndrome!) and transcriptions. In our free time we set up a sea star disease […]
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Morgan Eisenlord posted an update in the group
Ecology of Infectious Marine Diseases [course] 4 years, 6 months ago
My week 1 review video is posted!
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Morgan Eisenlord wrote a new notebook entry Invertebrate immune response in the group
Ecology of Infectious Marine Diseases [course]: 4 years, 6 months ago
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Morgan Eisenlord posted a new activity comment 4 years, 6 months ago
The exposed stars were all in early disease stages. The control stars remained healthy. I will include photos for each star on the day samples were taken. We also ran qPCR on samples taken at the same time from these animals, as well as EM and histology.
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Morgan Eisenlord posted a new activity comment 4 years, 6 months ago
Thanks Steven! I will post a write up of the experiment when I get a chance. It will be done before we start on this data set.
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