Summary of new project

Comparing the DNA methylation pattern of oysters to see if the location the oysters are planted at changes the expression of some genes.

The oysters had parents from the same the location. Half the number of oysters of F1 generation were planted at Fidalgo Bay and the other half were planted at Oyster Bay

Things I learned today:

  • how to use command line to access the iPython notebook on web.
  • how to access files on the computer from the notebook
  • how to check quality of the data

Note: Only methylated cytosine remain as cytosine after disulfide sequencing. Others are turned into Uracil.