Category Archives: Miscellaneous

  • Data Science class – Project Report

    I took BIOL 419: Data Science for Biologists in Winter 2016. My project group used Jake Heare’s data from https://github.com/jheare/OluridaSurvey2014 for final project. We used various classifiers and visualization to analyze the data. This is the link to final project report: https://docs.google.com/document/d/1QBFr_o29CAuwWlZhbJjLeIPDhjnRwGdHzmOfN4d4b6Y/edit?usp=sharing

  • using IPython and command line

    Trying to open and work with notebook and command line by myself turned out to be more difficult than I thought. All the commands and code I used on Wednesday and Friday: Type ‘cd <drag the directory> ipython’ to select that as a directory in command line To open the notebook ‘ipython notebook’ in command »more

  • Opening oysters – 10/22/2015

    Took out 7 oysters from Fidalgo Bay population for DNA extraction. I collected gill tissue from oysters #15 – 21 for DNA extraction (Oyster #17 was dead.). Gill tissues of all oyster were collected in MBL 1 buffer and proteinase K for DNA isolation by  mollusc kit. Placed all the tubes with gill tissues in »more